Join us for a workshop on making your research software more reusable and citable! Caltech Library welcomes Daniel S.
Katz from the National Center For Supercomputing Applications (NCSA) at University of Illinois Urbana-Champaign. Katz is an author of the Force11 Software Citation Principles and has extensive experience designing research software. The workshop will start with a presentation on research software best practices. We'll then have a discussion about implementing these principles, including campus resources such as the Caltech Research Data Repository. Box lunches will be provided by the library, and registration is required.
Instructors: Tom Morrell, Stephen Davison, Tommy Keswick This workshop is customized for the Caltech Postdoc association to focus only on Python. While it uses content from the Software and Data Carpentry curriculum, it is not an official workshop because it does not include instruction on the command line and version control. Please fill out the post-workshop survey before you leave. General Information aims to help researchers get their work done in less time and with less pain by teaching them basic research computing skills. This hands-on workshop will cover basic concepts and tools, including program design, version control, data management, and task automation.
Participants will be encouraged to help one another and to apply what they have learned to their own research problems. For more information on what we teach and why, please see our paper '.
Who: The course for Caltech Postdocs. The library will offer additional general Software and Data Carpentry courses soon. You don't need to have any previous knowledge of the tools that will be presented at the workshop. Where: Millikan 9th Floor. Get directions with.
When: May 7-8, May 14-15. Requirements: Participants must bring a laptop with a Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.) that they have administrative privileges on.
They should have a few specific software packages installed (listed ). They are also required to abide by Software Carpentry's. Accessibility: We are committed to making this workshop accessible to everybody. The workshop organizers have checked that:. The room is wheelchair / scooter accessible. Materials will be provided in advance of the workshop and large-print handouts are available if needed by notifying the organizers in advance. If we can help making learning easier for you (e.g.
Sign-language interpreters, lactation facilities) please get in touch (using contact details below) and we will attempt to provide them. Contact: Please email for more information.
Python is a popular language for research computing, and great for general-purpose programming as well. Installing all of its research packages individually can be a bit difficult, so we recommend, an all-in-one installer. Regardless of how you choose to install it, please make sure you install Python version 3.x (e.g., 3.6 is fine). We will teach Python using the, a programming environment that runs in a web browser.
For this to work you will need a reasonably up-to-date browser. The current versions of the Chrome, Safari and Firefox browsers are all (some older browsers, including Internet Explorer version 9 and below, are not). Linux. Open with your web browser. Download the Python 3 installer for Linux. (The installation requires using the shell.
If you aren't comfortable doing the installation yourself stop here and request help at the workshop.). Open a terminal window. Type bash Anaconda3- and then press tab.
The name of the file you just downloaded should appear. If it does not, navigate to the folder where you downloaded the file, for example with: cd Downloads Then, try again. Press enter. You will follow the text-only prompts. To move through the text, press the space key. Type yes and press enter to approve the license.
Press enter to approve the default location for the files. Type yes and press enter to prepend Anaconda to your PATH (this makes the Anaconda distribution the default Python). Type 'conda install -c conda-forge plotnine'. Hit enter. Close the terminal window. We won’t use these programs much in this workshop, but they are useful to have installed. Windows.
Caltech Library System Workshop Papers For Mac
Download the Git for Windows. Run the installer and follow the steps bellow:.
Click on 'Next'. Click on 'Next'. Keep 'Use Git from the Windows Command Prompt' selected and click on 'Next'. If you forgot to do this programs that you need for the workshop will not work properly.
If this happens rerun the installer and select the appropriate option. Click on 'Next'. Keep 'Checkout Windows-style, commit Unix-style line endings' selected and click on 'Next'. Keep 'Use Windows' default console window' selected and click on 'Next'. Click on 'Install'.
Click on 'Finish'. If your 'HOME' environment variable is not set (or you don't know what this is):. Open command prompt (Open Start Menu then type cmd and press Enter). Type the following line into the command prompt window exactly as shown: setx HOME '%USERPROFILE%'. Press Enter, you should see SUCCESS: Specified value was saved.
Quit command prompt by typing exit then pressing Enter This will provide you with both Git and Bash in the Git Bash program.
General Information workshops are for any researcher who has data they want to analyze, and no prior computational experience is required. This hands-on workshop teaches basic concepts, skills and tools for working more effectively with data. We will cover Data organization in spreadsheets and OpenRefine, Command line and version control, Data analysis and visualization in Python and Data manipulation and loops in Python. Participants should bring their laptops and plan to participate actively. By the end of the workshop learners should be able to more effectively manage and analyze data and be able to apply the tools and approaches directly to their ongoing research. Who: The course is for Caltech graduate students. Where: Millikan 9th Floor.
Get directions with. Requirements: Participants must bring a laptop with a Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.) that they have administrative privileges on. They should have a few specific software packages installed (listed ). They are also required to abide by Data Carpentry's.
Contact: Please mail for more information. Registration Register by completing the forms at the following links:. Info on driver update 2.0.9 for mac.
A registration deposit of $20 is required for each day. Each registration deposit will be completely refunded upon successful check-in. Registration will also be refundable via cancellation before April 21, 2017 by 5 PM PST. The $20 deposit for each day must be paid to GSC using the following links within 72 hours of registration to hold your reservation.
Preliminary Schedule Surveys Please be sure to complete these surveys before and after the workshop. Programming in Python. Using libraries. Working with arrays. Reading and plotting data. Creating and using functions.
Loops and conditionals. Setup To participate in a Data Carpentry workshop, you will need working copies of the described software. Please make sure to install everything (or at least to download the installers) before the start of your workshop. Participants should bring and use their own laptops to insure the proper setup of tools for an efficient workflow once you leave the workshop. Please follow these.
We maintain a list of common issues that occur during installation as a reference for instructors that may be useful on the.
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